PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487266.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 392aa    MW: 44626.8 Da    PI: 8.1461
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-09116137426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+ ++r G C++Gd+C FaHg
  XP_004487266.1 116 SVCSEYRR-GSCNRGDTCEFAHG 137
                     68******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.4E-5112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.371113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5116139IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7116137IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287147171IPR000571Zinc finger, CCCH-type
SMARTSM003562.4147170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MTTICEQQQQ HKFHSSYQPL SPKKPLREID IPPRKLLTRR TADMFSDDTI LQKFLPHNDS  60
DSDSDDPYSS DHFRMYEFKV RRCTRSRSHD WTDCPFAHPG EKARRRDPRR FHYSGSVCSE  120
YRRGSCNRGD TCEFAHGVFE CWLHPARYRT EACKDGKNCK RKVCFFAHTP RQLRILPVTS  180
SNSNDQFSCN KKNNKILNNH VGSKTNNCCL FCHCNGANNS PTSTLFGMSH FSPPASPPLS  240
PMKPRNGVSS VSSLARYGSV NNSNNLRYRD MLVDLLGSFE GLNFNENSSS SCSSPVSKIQ  300
NNNMGWLDLP LNSEEQQYQQ FIVSPSSSSS FDQQQQNFDI HQNLMTPSFN DIGDNNIIEN  360
KMMFLGNENN KMVVGGGEVN APDLGWVNEL LM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487266.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
TrEMBLA0A072VAW21e-176A0A072VAW2_MEDTR; Uncharacterized protein
STRINGGLYMA12G33320.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-72C3H family protein